Economic Principles in Cell Biology          

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Summer school “Economic Principles in Cell Biology” - Paris, July 8-11, 2024

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Topics of the course

The summer school is centered around the topics of our free and open textbook “Economic principles in cell biology” about cellular physiology and resource allocation, and will feature a number of (existing or planned) chapters as lectures. The course addresses students and young researchers with a natural science, engineering, or mathematics background. The first lectures give an introduction to basic metabolic and cell modeling, followed by lectures about more specific topics such as scaling relations and biological behaviour in the presence of randomness. In-person participants will also be involved in discussions around our book project.

On the last day, all in-person participants are invited to participate in an Atelier SEnS workshop about personal values and how they relate to one's work as a researcher.

Course schedule

Monday

Tuesday

Wednesday

Thursday

(10 am)
The economy of the cell
Meike Wortel
 

(10 am)
Principles of cell growth
Hollie J. Hindley
 

(10 am)
Economy of organ
form and function

Frédérique Noël

Atelier SEnS
All day (9am - 5pm)

 

(11 am)
An inventory of
cell components

Diana Széliová / Pranas Grigaitis

(11 am)
Growth balance analysis
Hugo Dourado
 

(11 am)
Diversity of metabolic
flux distributions

Roberto Mulet

(noon)
Lunch break and get-together

(noon)
Lunch break and group photo

(noon)
Lunch break

(1 pm)
Optimality in biology
Markus Köbis

(1 pm)
Free discussion/group work

 

(1 pm)
Book - plans for the future
Plenary discussion

 

(2 pm)
Cell metabolism
Orkun Soyer
 

(2 pm)
Scaling laws
in cell evolution

Sergio Munoz-Gomez

(2 pm)
The origin of life
Sanjay Jain
 

Coffee break (3 pm)

Coffee break (3 pm)

Coffee break (3 pm)

(3:30 pm)
Optimization of
metabolic fluxes

Steffen Waldherr

(3:30 pm)
Cells in the face
of uncertainty

David Lacoste / Olivier Rivoire

(3:30 pm)
The return on investment
in cells

H.-S. Song / D. Ramkrishna

Guided tour of the LPI (4:30 pm)
Virginie Chomier

(4:30 pm)
Night Science Martin Lercher

(4:30 pm)
Course feedback

Get-together (7:30 pm)


 Hybrid lecture      Remote lecture     Hours are Paris time (CEST)

Teachers and authors present in Paris

  1. Anne Goelzer, INRAE
  2. David Lacoste, ESPCI Paris
  3. Diana Széliová, Universität Wien
  4. Frédérique Noël, Sorbonne Université
  5. Hidde de Jong, INRIA
  6. Hugo Dourado, Heinrich-Heine Universität Düsseldorf
  7. Hollie J. Hindley, University of Edinburg
  8. Markus Köbis, NTNU Trondheim
  9. Meike Wortel, Universiteit van Amsterdam
  10. Natalia Kotelnikova-Weiler
  11. Olivier Rivoire, ESPCI Paris
  12. Pranas Grigaitis, Vrije Universiteit Amsterdam
  13. Roberto Mulet, Universidad de La Habana
  14. Sophie Quinton, INRIA
  15. Steffen Waldherr, Universität Wien
  16. Wolfram Liebermeister, INRAE

Teachers giving lectures online

  1. Doraiswami Ramkrishna, Purdue University
  2. Hyun-Seob Song, University of Nebraska - Lincoln
  3. Martin Lercher, HHU Düsseldorf
  4. Sanjay Jain, University of Delhi
  5. Sergio Munoz-Gomez, Purdue University
  6. Orkun Soyer, Warwick University

Night Science

On Tuesday we will host a Night Science session, a course on the creative scientific process, developed by Itai Yanai and Martin Lercher.

Website: night-science.org
Editorials: www.biomedcentral.com/collections/night-science
Podcast: nightscience.buzzsprout.com (with links to spotify etc.)

Atelier SEnS

The workshop Atelier SEnS ("Science, environment, society") on Thursday will be held by Sophie Quinton and Natalia Kotelnikova-Weiler. The workshop addresses young scientists and engineers and provides an opportunity, especially for PhD students, to think about defining decisions for their future life and career. More information can be found here.

The SEnS workshop has been designed to provide tools and resources for this purpose, to a group of 5 to 15 people working in academia. It aims to offer a venue to collectively discuss the consequences of our research, the values that it conveys, and more generally how scientific research fits in the anthropocene; provide an introduction to science and technology studies, in particular to the philosophy, history, and sociology of science; and initiate a collective construction of a social and environmental responsibility of research. The objective is not to reach a consensus between the participants, but rather to provide everyone with the opportunity to reflect and take a stance on current environmental issues in a respectful and constructive setting. By confronting ideas and sharing knowledge, the goal is then to find common ground.